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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BRCA cis rs2243480 1 rs13247184 chr7:65358928 ZNF117 chr7:64434830-64467121:- -0.27 -4.92 9.85E-7 Diabetic kidney disease
BRCA cis rs1325195 1 rs1325195 chr1:179071756 ABL2 chr1:179068463-179198819:- -0.17 -6.47 1.51E-10 IgE grass sensitization
BRCA cis rs1325195 1 rs1325195 chr1:179071756 TOR3A chr1:179051112-179065127:+ -0.14 -4.88 1.25E-6 IgE grass sensitization
BRCA cis rs42490 1 rs13252013 chr8:90759109 RIPK2 chr8:90769975-90803291:+ 0.16 6.08 1.65E-9 Leprosy
BRCA cis rs7017914 1 rs13252719 chr8:71734569 XKR9 chr8:71581600-71648176:+ 0.88 31.82 8.33E-157 Bone mineral density
BRCA cis rs7017914 1 rs13253842 chr8:71625503 XKR9 chr8:71581600-71648176:+ 0.86 31.13 6.88E-152 Bone mineral density
BRCA cis rs10808739 1 rs13265280 chr8:65702121 CYP7B1 chr8:65508529-65711348:- 0.12 3.8 0.000155 HIV-1 susceptibility
BRCA cis rs10808739 1 rs13271746 chr8:65677873 CYP7B1 chr8:65508529-65711348:- 0.13 4.02 6.34E-5 HIV-1 susceptibility
BRCA cis rs10808739 1 rs13272719 chr8:65663801 CYP7B1 chr8:65508529-65711348:- 0.11 3.45 0.000584 HIV-1 susceptibility
BRCA cis rs4831760 1 rs13276710 chr8:15537675 TUSC3 chr8:15397730-15621993:+ 0.22 4.89 1.18E-6 Pulmonary function decline
BRCA cis rs4831760 1 rs13277232 chr8:15537825 TUSC3 chr8:15397730-15621993:+ 0.22 4.89 1.16E-6 Pulmonary function decline
BRCA cis rs42490 1 rs13279023 chr8:90761044 RIPK2 chr8:90769975-90803291:+ 0.16 6.09 1.54E-9 Leprosy
BRCA cis rs2243480 1 rs13310597 chr7:65598540 CCT6P1 chr7:65216092-65228661:+ 0.33 6.95 6.39E-12 Diabetic kidney disease
BRCA cis rs2243480 1 rs13310597 chr7:65598540 LOC493754 chr7:65993446-66057363:- 0.25 4.09 4.59E-5 Diabetic kidney disease
BRCA cis rs965469 1 rs1331215 chr20:3376565 ITPA chr20:3190056-3204504:+ -0.13 -3.82 0.000139 IFN-related cytopenia